Looking for DNA motifs Gibbs sampler (SeSiMCMC) result.

Input FastA file name: arg.dnc

The sampler was looking for sites on both strands of 9 sequences of length from 200 through 400.

The site length found is 35.
The sampler has tested the lengths in [6,100].
The motif is formed by 8 sites and 0 additional sites, whose
match it better than the 1 worst from the originating set.
The latter are marked with "*" in the table.

All the positions are 0-based.

The background symbols probabilities
atgc
0.297 0.274 0.205 0.224


The table of positional symbols probabilities forming the motif
atgc
00.268 0.623 0.0512 0.0572
10.177 0.0778 0.506 0.239
20.814 0.0778 0.0512 0.0572
30.814 0.0778 0.0512 0.0572
40.177 0.714 0.0512 0.0572
50.45 0.351 0.142 0.0572
60.45 0.441 0.0512 0.0572
70.541 0.351 0.0512 0.0572
80.45 0.169 0.0512 0.33
90.814 0.0778 0.0512 0.0572
100.177 0.532 0.0512 0.239
110.177 0.441 0.233 0.148
120.0865 0.0778 0.0512 0.784
130.814 0.0778 0.0512 0.0572
140.177 0.169 0.233 0.421
150.177 0.714 0.0512 0.0572
160.45 0.441 0.0512 0.0572
170.359 0.532 0.0512 0.0572
180.45 0.441 0.0512 0.0572
190.0865 0.805 0.0512 0.0572
200.541 0.351 0.0512 0.0572
210.0865 0.714 0.0512 0.148
220.0865 0.0778 0.778 0.0572
230.359 0.169 0.142 0.33
240.723 0.0778 0.142 0.0572
250.0865 0.805 0.0512 0.0572
260.723 0.0778 0.142 0.0572
270.723 0.169 0.0512 0.0572
280.45 0.441 0.0512 0.0572
290.541 0.26 0.0512 0.148
300.814 0.0778 0.0512 0.0572
310.177 0.714 0.0512 0.0572
320.268 0.532 0.142 0.0572
330.0865 0.0778 0.0512 0.784
340.814 0.0778 0.0512 0.0572

The description of sites
Gene IdPositionLengthScoreDirectionSite in sequenceSite-as-in-motif
argA663531.5>aaaacAgAATaAAaAtaCAcTAATTTCGaATAATcATgCAaagagaaaacAgAATaAAaAtaCAcTAATTTCGaATAATcATgCAaagag
argCBH543536.29>tagtaTcAATaTTcAtgCAgTATTTATGaATAAAaATaCActaactagtaTcAATaTTcAtgCAgTATTTATGaATAAAaATaCActaac
argD493528.99>aaatgTgAAAtTAtAacCAcAAAATATGcATAAAaAAtCActaaaaaatgTgAAAtTAtAacCAcAAAATATGcATAAAaAAtCActaaa
argE543536.29>tagtaTcAATaTTcAtgCAgTATTTATGaATAAAaATaCActaactagtaTcAATaTTcAtgCAgTATTTATGaATAAAaATaCActaac
argF583536.41>cttatTgAATtAAaAttCAcTTTATATGtGTAATtATtCAtttgccttatTgAATtAAaAttCAcTTTATATGtGTAATtATtCAtttgc
argG1393533.83>atgatTaAATgAAaActCAtTTATTTTGcATAAAaATtCAgtgagatgatTaAATgAAaActCAtTTATTTTGcATAAAaATtCAgtgag
argI513534.93>ctcaaTgAATtAAaAttCAaTTTATATGgATGATtATtCAtttgcctcaaTgAATtAAaAttCAaTTTATATGgATGATtATtCAtttgc
carAB33535.51<  ttgTGaATtAATATgCAAATAAAgTGagTgAAtATTcTctggatccagAgAATaTTcActCAcTTTATTTGcATATTaATtCAcaa  

The list of sites
argA           AgAATaAAaAtaCAcTAATTTCGaATAATcATgCA
argCBH         TcAATaTTcAtgCAgTATTTATGaATAAAaATaCA
argD           TgAAAtTAtAacCAcAAAATATGcATAAAaAAtCA
argE           TcAATaTTcAtgCAgTATTTATGaATAAAaATaCA
argF           TgAATtAAaAttCAcTTTATATGtGTAATtATtCA
argG           TaAATgAAaActCAtTTATTTTGcATAAAaATtCA
argI           TgAATtAAaAttCAaTTTATATGgATGATtATtCA
carAB          AgAATaTTcActCAcTTTATTTGcATATTaATtCA